MeRGE Expo 3: NONMEM Bayesian estimation with bbr.bayes

Model Management

Example model submission workflow with bbr.bayes.

bbr

model management

nonmem

MCMC Diagnostics

Example MCMC diagnostics with bbr.bayes.

bbr

model management

Model Diagnostics

Model diagnostics with pmplots and yspec.

diagnostics

pmplots

yspec

post processing

reporting

Visual Predictive Check

Perform visual predictive checks with the mrgsolve and vpc packages.

vpc

mrgsolve

mrggsave

Parameter Tables

Generate parameter tables with pmtables.

pmtables

bbr

bbr.bayes

Covariate Forest Plots

Simulate outcomes from model posterior with mrgsolve.

pmforest

mrgsolve

Parameterized Reports for Model Diagnostics

Model diagnostics with pmplots, yspec and parameterized reports.

diagnostics

pmplots

yspec

mrggsave

post processing

reporting

Introduction to MetrumRG tools

Brief overview of MetrumRG tools

mpn

pkgr

bbr

mrggsave

mrgsolve

pmforest

pmplots

pmtables

yspec

Introduction to Bayesian Tools

Brief overview of Bayesian modeling tools used in this analysis

mpn

Data Definitions

Data definitions for the pk.csv PK model data set.

yspec

data

About the Model

Overview of the Expo pharmacokinetic (PK) model.

model

info

MeRGE Expo 3

Categories

Model Management

MCMC Diagnostics

Model Diagnostics

Visual Predictive Check

Parameter Tables

Covariate Forest Plots

Parameterized Reports for Model Diagnostics

Introduction to MetrumRG tools

Introduction to Bayesian Tools

Data Definitions

About the Model

About the GitHub Repo

About Metworx