MeRGE Expo 4

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Reproducibility and Traceability

A note about how bbr.bayes enables reproducible and traceable research.
bbr
model management

Initial Model

Example model submission workflow with bbr.bayes
bbr
bbr.bayes
model management

MCMC Diagnostics

Example MCMC diagnostics with bbr.bayes.
bbr.bayes
diagnostics

Model Diagnostics

Goodness-of-fit diagnostics with focus on posterior predictive checking
diagnostics
post processing

Update Model

Model revision workflow with bbr.bayes.
bbr
bbr.bayes
model management

Generated Quantities Models

Generated quantities model workflow with bbr.bayes.
bbr
bbr.bayes
model management
simulation

Summarizing and Comparing Models

Using bbr.bayes functions to summarize modeling history
bbr
model history
model comparison

Parallel Computation

Implementing within-chain parallel computation with Stan/Torsten
bbr
model management
parallel computation

Shrinkage Priors

Use of shrinkage priors for covariate regression coefficients
bbr
priors
covariates
pmforest

Data Definitions

Data definitions for the pk.csv pharmacokinetic model data set.
yspec
data

About the Model

Overview of the Expo pharmacokinetic models.
model
info

Introduction to MetrumRG Tools

Brief overview of MetrumRG tools
Torsten
mpn
pkgr
bbr
mrggsave
mrgsolve
pmforest
pmplots
pmtables
yspec

Introduction to Bayesian Tools

Brief overview of Bayesian modeling tools used in this analysis
mpn

Installing Torsten

Using the bbr.bayes install_torsten() function
Torsten

About the GitHub Repo

About Metworx

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