MeRGE Expo 2: Stan with bbr

Reproducibility and Traceability

A note about how bbr.bayes enables reproducible and traceable research.

bbr

model management

Initial Model

Example model submission workflow with bbr.bayes.

bbr

model management

Stan Model Diagnostics

Example model diagnostics and posterior predictive checks with bbr.bayes.

bbr

model management

Update Traceable Model

Example of copying and revising Stan models using bbr.bayes.

bbr

model management

Generated Quantities Models

Example generated quantities model workflow with bbr.bayes.

bbr

model management

Modeling Summary

Example of using bbr.bayes to summarize across a set of fitted models.

bbr

model management

Introduction to MetrumRG tools

Brief overview of MetrumRG tools

mpn

pkgr

bbr

mrggsave

mrgsolve

pmforest

pmplots

pmtables

yspec

Introduction to Bayesian Tools

Brief overview of Bayesian modeling tools used in this analysis

mpn

cmdstanr

About the Data

Data description and definitions for the exdata3.csv model data set.

yspec

data

About the Models

Description of models fitted to the FXa inhibition data.

MeRGE Expo 2

Categories

Reproducibility and Traceability

Initial Model

Stan Model Diagnostics

Update Traceable Model

Generated Quantities Models

Modeling Summary

Introduction to MetrumRG tools

Introduction to Bayesian Tools

About the Data

About the Models

About the GitHub Repo

About Metworx